Dieses Bild zeigt Björn Voß

Björn Voß

Herr Prof. Dr. rer. nat.

Direktor der Abteilung RNA Biologie & Bioinformatik
Institut für Biomedizinische Genetik
RNA Biologie & Bioinformatik
[Foto: Björn Voß]

Kontakt

+49 711 685 65035
+49 711 685 55035

Visitenkarte (VCF)

Allmandring 31
70569 Stuttgart
Deutschland
Raum: 01.107

Sprechstunde

Dienstag, 11:00 - 12:00 Uhr

Fachgebiet

  • RNA Biologie
  • Bioinformatik
  • Computational Biology
Publikationen:
  1. 2021

    1. 58. R. A. Schäfer und B. Voß, „RNAnue: efficient data analysis for RNA–RNA interactomics“, Nucleic Acids Research, Nr. gkab340, Art. Nr. gkab340, Mai 2021, doi: 10.1093/nar/gkab340.
    2. 57. J. Huang und B. Voß, „Simulation of Folding Kinetics for Aligned RNAs“, Genes, Bd. 12, Nr. 3, Art. Nr. 3, Feb. 2021, doi: 10.3390/genes12030347.
    3. 56. P. Märkle u. a., „A small RNA is linking CRISPR-Cas and zinc transport“, Frontiers in Molecular Biosciences, Bd. 8, 2021, doi: 10.3389/fmolb.2021.640440.
  2. 2020

    1. 55. R. A. Schäfer, S. C. Lott, J. Georg, B. A. Grüning, W. R. Hess, und B. Voß, „GLASSGo in Galaxy: High-Throughput, Reproducible and Easy-to-Integrate Prediction of sRNA Homologs“, Bioinformatics, Nr. btaa556, Art. Nr. btaa556, Juni 2020, doi: 10.1093/bioinformatics/btaa556.
    2. 54. A. Ankenbauer u. a., „Pseudomonas Putida KT2440 Is Naturally Endowed to Withstand Industrial-Scale Stress Conditions“, Microbial Biotechnology, Bd. n/a, Nr. n/a, Art. Nr. n/a, 2020, doi: 10.1111/1751-7915.13571.
    3. 53. O. S. Alkhnbashi, T. Meier, A. Mitrofanov, R. Backofen, und B. Voß, „CRISPR-Cas Bioinformatics“, Methods, Bd. 172, S. 3–11, Feb. 2020, doi: https://doi.org/10.1016/j.ymeth.2019.07.013.
  3. 2018

    1. 52. B. Schönberger, C. Schaal, R. Schäfer, und B. Voß, „RNA interactomics: recent advances and remaining challenges“, F1000Research, Bd. 7, S. 1824, Nov. 2018, doi: 10.12688/f1000research.16146.1.
    2. 51. S. C. Lott u. a., „GLASSgo - Automated and reliable detection of sRNA homologs from a single input sequence“, Frontiers in Genetics, Bd. 9, 2018, doi: 10.3389/fgene.2018.00124.
  4. 2017

    1. 50. U. Pfreundt, D. Spungin, S. Hou, B. Voß, I. Berman-Frank, und W. R. Hess, „Genome of a giant bacteriophage from a decaying Trichodesmium bloom“, Marine Genomics, Bd. 33, S. 21–25, 2017, doi: https://doi.org/10.1016/j.margen.2017.02.001.
  5. 2016

    1. 49. D. Stazic und B. Voß, „The complexity of bacterial transcriptomes“, Journal of Biotechnology, Bd. 232, S. 69--78, Aug. 2016, doi: 10.1016/j.jbiotec.2015.09.041.
    2. 48. D. Álvarez u. a., „5’UTR-Mediated Translational Control of Splice Variants of Phytoene Synthase“, Plant Physiol., S. pp.01262.2016, 2016.
    3. 47. R. A. Schäfer und B. Voß, „VisualGraphX: interactive graph visualization within Galaxy“, Bioinformatics, S. btw414, Juli 2016, doi: 10.1093/bioinformatics/btw414.
  6. 2015

    1. 46. M. Kopf, S. Klähn, I. Scholz, W. R. Hess, und B. Voß, „Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria“, Scientific Reports, Bd. 5, Nr. 9560, Art. Nr. 9560, 2015.
    2. 45. S. C. Lott, B. Voß, W. R. Hess, und C. Steglich, „CoVennTree: a new method for the comparative analysis of large datasets“, Bioinformatics and Computational Biology, Bd. 6, S. 43, 2015, doi: 10.3389/fgene.2015.00043.
  7. 2014

    1. 44. M. Kopf u. a., „Comparative Genome Analysis of the Closely Related Synechocystis Strains PCC 6714 and PCC 6803“, DNA Research, Bd. 21, Nr. 3, Art. Nr. 3, Juni 2014, doi: 10.1093/dnares/dst055.
    2. 43. M. Kopf u. a., „Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714“, Genome Announcements, Bd. 2, Nr. 4, Art. Nr. 4, Aug. 2014, doi: 10.1128/genomeA.00757-14.
    3. 42. B. Voß und W. R. Hess, „The identification of bacterial non-coding RNAs through complementary approaches“, in Handbook of RNA Biochemistry, 2. Aufl., Bd. 2, in Handbook of RNA Biochemistry, vol. 2. , WILEY-VCH, Weinheim, Germany, 2014, S. 787--800.
    4. 41. T. Bischler, M. Kopf, und B. Voß, „Transcript mapping based on dRNA-seq data“, BMC Bioinformatics, Bd. 15, Nr. 1, Art. Nr. 1, Apr. 2014, doi: 10.1186/1471-2105-15-122.
    5. 40. M. Kopf, S. Klähn, I. Scholz, J. K. F. Matthiessen, W. R. Hess, und B. Voß, „Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803“, DNA Research, Bd. 21, Nr. 5, Art. Nr. 5, Juni 2014, doi: 10.1093/dnares/dsu018.
    6. 39. J. Huang und B. Voß, „Analysing RNA-kinetics based on folding space abstraction“, BMC Bioinformatics, Bd. 15, Nr. 1, Art. Nr. 1, Feb. 2014, doi: 10.1186/1471-2105-15-60.
    7. 38. K. Voigt u. a., „Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity“, The ISME Journal, Apr. 2014, doi: 10.1038/ismej.2014.57.
    8. 37. A. Rogato u. a., „The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum“, BMC Genomics, Bd. 15, Nr. 1, Art. Nr. 1, Aug. 2014, doi: 10.1186/1471-2164-15-698.
    9. 36. R. Giegerich und B. Voß, „RNA Secondary Structure Analysis Using Abstract Shapes“, in Handbook of RNA Biochemistry, 2. Aufl., Bd. 2, in Handbook of RNA Biochemistry, vol. 2. , WILEY-VCH, Weinheim, Germany, 2014, S. 579--594.
  8. 2013

    1. 35. S. Hein, I. Scholz, B. Voß, und W. R. Hess, „Adaptation and modification of three CRISPR loci in two closely related cyanobacteria“, RNA Biology, Bd. 10, Nr. 5, Art. Nr. 5, 2013, [Online]. Verfügbar unter: http://www.landesbioscience.com/journals/rnabiology/article/24160/
    2. 34. B. Voß u. a., „Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis“, PLoS ONE, Bd. 8, Nr. 3, Art. Nr. 3, 2013, doi: 10.1371/journal.pone.0060224.
  9. 2012

    1. 33. G. Gierga, B. Voß, und W. R. Hess, „Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions“, The ISME Journal, Bd. 6, Nr. 8, Art. Nr. 8, Aug. 2012, doi: 10.1038/ismej.2011.215.
    2. 32. D. Trautmann, B. Voß, A. Wilde, S. Al-Babili, und W. R. Hess, „Microevolution in Cyanobacteria: Re-sequencing a Motile Substrain of Synechocystis sp. PCC 6803“, DNA Research, Okt. 2012, doi: 10.1093/dnares/dss024.
    3. 31. R. Madhugiri u. a., „Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis“, RNA Biology, Bd. 9, Nr. 1, Art. Nr. 1, Jan. 2012, doi: 10.4161/rna.9.1.18008.
    4. 30. J. Huang, R. Backofen, und B. Voß, „Abstract folding space analysis based on helices“, RNA, Bd. 18, Nr. 12, Art. Nr. 12, Dez. 2012, doi: 10.1261/rna.033548.112.
    5. 29. U. Pfreundt, L. J. Stal, B. Voß, und W. R. Hess, „Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium“, ISME J, Jan. 2012, [Online]. Verfügbar unter: http://dx.doi.org/10.1038/ismej.2011.199
  10. 2011

    1. 28. J. Mitschke u. a., „An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803“, Proceedings of the National Academy of Sciences, Bd. 108, Nr. 5, Art. Nr. 5, Feb. 2011, doi: 10.1073/pnas.1015154108.
    2. 27. J. Babski u. a., „Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii“, RNA Biology, Bd. 8, Nr. 5, Art. Nr. 5, Sep. 2011, doi: 10.4161/rna.8.5.16039.
    3. 26. J. Huang und B. Voß, „RNAHeliCes – Folding space analysis based on position aware structure abstraction“, in Proceedings of the German Conference on Bioinformatics 2011 (GCB 2011), in Proceedings of the German Conference on Bioinformatics 2011 (GCB 2011). Juli 2011, S. RT--31.
  11. 2010

    1. 25. S. Bogomolov, M. Mann, B. Voß, A. Podelski, und R. Backofen, „Shape-based barrier estimation for RNAs“, in In Proceedings of German Conference on Bioinformatics GCB’10, in In Proceedings of German Conference on Bioinformatics GCB’10, vol. 173. GI, 2010, S. 42--51.
    2. 24. D. Ionescu, B. Voß, A. Oren, W. R. Hess, und A. M. Muro-Pastor, „Heterocyst-Specific Transcription of NsiR1, a Non-Coding RNA Encoded in a Tandem Array of Direct Repeats in Cyanobacteria“, Journal of Molecular Biology, Bd. 398, Nr. 2, Art. Nr. 2, Apr. 2010, doi: 10.1016/j.jmb.2010.03.010.
    3. 23. B. Voß, L. Meinecke, T. Kurz, S. Al-Babili, C. F. Beck, und W. R. Hess, „Hemin and Mg-Protoporphyrin IX Induce Global Changes in Gene Expression in Chlamydomonas reinhardtii“, Plant Physiol., S. pp.110.158683, 2010, doi: 10.1104/pp.110.158683.
    4. 22. R. Mohr u. a., „A new chlorophyll d-containing cyanobacterium: evidence for niche adaptation in the genus Acaryochloris“, ISME J, Bd. 4, Nr. 11, Art. Nr. 11, Nov. 2010, [Online]. Verfügbar unter: http://dx.doi.org/10.1038/ismej.2010.67
    5. 21. J. Georg, A. Honsel, B. Voß, H. Rennenberg, und W. R. Hess, „A long antisense RNA in plant chloroplasts“, New Phytologist, Bd. 186, Nr. 3, Art. Nr. 3, 2010, doi: 10.1111/j.1469-8137.2010.03203.x.
  12. 2009

    1. 20. B. Voß u. a., „Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti“, Biochemical and Biophysical Research Communications, Bd. 390, Nr. 2, Art. Nr. 2, 2009, doi: 10.1016/j.bbrc.2009.09.125.
    2. 19. G. Gierga, B. Voß, und W. R. Hess, „The Yfr2 ncRNA family, a group of abundant RNA molecules widely conserved in cyanobacteria“, RNA Biology, Bd. 6, Nr. 3, Art. Nr. 3, Juli 2009, doi: 10.4161/rna.6.3.8921.
    3. 18. B. Voß, J. Georg, V. Schon, S. Ude, und W. Hess, „Biocomputational prediction of non-coding RNAs in model cyanobacteria“, BMC Genomics, Bd. 10, Nr. 1, Art. Nr. 1, 2009, doi: 10.1186/1471-2164-10-123.
    4. 17. J. Georg, B. Voß, I. Scholz, J. Mitschke, A. Wilde, und W. R. Hess, „Evidence for a major role of antisense RNAs in cyanobacterial gene regulation“, Mol Syst Biol, Bd. 5, 2009, doi: 10.1038/msb.2009.63.
    5. 16. J. Soppa u. a., „Small RNAs of the halophilic archaeon Haloferax volcanii“, Biochemical Society Transactions, Bd. 37, Nr. Pt 1, Art. Nr. Pt 1, Feb. 2009, doi: 10.1042/BST0370133.
  13. 2008

    1. 15. C. Steglich, M. E. Futschik, D. Lindell, B. Voß, S. W. Chisholm, und W. R. Hess, „The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus“, PLoS Genet, Bd. 4, Nr. 8, Art. Nr. 8, 2008, doi: 10.1371%2Fjournal.pgen.1000173.
  14. 2007

    1. 14. I. Fattash, B. Voß, R. Reski, W. Hess, und W. Frank, „Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution“, BMC Plant Biology, Bd. 7, Nr. 1, Art. Nr. 1, 2007, doi: 10.1186/1471-2229-7-13.
    2. 13. I. M. Axmann, J. Holtzendorff, B. Voß, P. Kensche, und W. R. Hess, „Two distinct types of 6S RNA in Prochlorococcus“, Gene, Bd. 406, Nr. 1–2, Art. Nr. 1–2, 2007, doi: 10.1016/j.gene.2007.06.011.
    3. 12. X. H. Chen u. a., „Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42“, Nat Biotech, Bd. 25, Nr. 9, Art. Nr. 9, 2007, doi: 10.1038/nbt1325.
    4. 11. B. Voß, G. Gierga, I. Axmann, und W. Hess, „A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria“, BMC Genomics, Bd. 8, Nr. 1, Art. Nr. 1, 2007, doi: 10.1186/1471-2164-8-375.
  15. 2006

    1. 10. M. Talmor-Neiman, R. Stav, W. Frank, B. Voß, und T. Arazi, „Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss“, The Plant Journal, Bd. 47, Nr. 1, Art. Nr. 1, 2006, doi: 10.1111/j.1365-313X.2006.02768.x.
    2. 9. B. Voß, R. Giegerich, und M. Rehmsmeier, „Complete probabilistic analysis of RNA shapes“, BMC Biology, Bd. 4, Nr. 1, Art. Nr. 1, 2006, doi: 10.1186/1741-7007-4-5.
    3. 8. J. Reeder, M. Höchsmann, M. Rehmsmeier, B. Voß, und R. Giegerich, „Beyond Mfold: Recent advances in RNA bioinformatics“, Journal of Biotechnology, Bd. 124, Nr. 1, Art. Nr. 1, Juni 2006, doi: 10.1016/j.jbiotec.2006.01.034.
    4. 7. P. Steffen, B. Voß, M. Rehmsmeier, J. Reeder, und R. Giegerich, „RNAshapes: an integrated RNA analysis package based on abstract shapes“, Bioinformatics, Bd. 22, Nr. 4, Art. Nr. 4, Feb. 2006, doi: 10.1093/bioinformatics/btk010.
    5. 6. R. Backofen u. a., „A Bottom-up approach to Grid-Computing at a University: the Black-Forest-Grid Initiative“, Praxis der Informationsverarbeitung und Kommunikation, Bd. 29, Nr. 2, Art. Nr. 2, 2006, [Online]. Verfügbar unter: http://www.degruyter.com/view/j/piko.2006.29.issue-2/piko.2006.81/piko.2006.81.xml
    6. 5. B. Voß, „Structural analysis of aligned RNAs“, Nucl. Acids Res., Bd. 34, Nr. 19, Art. Nr. 19, Nov. 2006, doi: 10.1093/nar/gkl692.
  16. 2005

    1. 4. B. Voß, „Advanced tools for RNA secondary structure analysis“, Universitätsbibliothek Bielefeld, 2005. [Online]. Verfügbar unter: http://bieson.ub.uni-bielefeld.de/volltexte/2005/664/
  17. 2004

    1. 3. M. Höchsmann, B. Voß, und R. Giegerich, „Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach“, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Bd. 1, Nr. 1, Art. Nr. 1, 2004, doi: http://doi.ieeecomputersociety.org/10.1109/TCBB.2004.11.
    2. 2. R. Giegerich, B. Voß, und M. Rehmsmeier, „Abstract shapes of RNA“, Nucl. Acids Res., Bd. 32, Nr. 16, Art. Nr. 16, Sep. 2004, doi: 10.1093/nar/gkh779.
    3. 1. B. Voß, C. Meyer, und R. Giegerich, „Evaluating the predictability of conformational switching in RNA“, Bioinformatics, Bd. 20, Nr. 10, Art. Nr. 10, Juli 2004, doi: 10.1093/bioinformatics/bth129.
  • Biostatistik
  • Analyse von Genom- und Transcriptomdaten
  • Machine Learning in Biology
  • Python Programming in Biology
  • Wissenschaftliche Methodik I
  • iGEM Team Stuttgart
  • Faculty of Opinions (formerly Faculty of 1000), Bioinformatics, Biomedical Informatics & Computational Biology
  • Section Editor-in-Chief, RNA section of the journal Genes, MDPI
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