Publikationen

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Bibliographie nach Jahren

  1. 2021

    1. 58.
      Schäfer, Richard A ; Voß, Björn: RNAnue: efficient data analysis for RNA–RNA interactomics. In: Nucleic Acids Research, Nucleic Acids Research. (2021), Nr. gkab340
    2. 57.
      Huang, Jiabin ; Voß, Björn: Simulation of Folding Kinetics for Aligned RNAs. In: Genes, Genes. Bd. 12, MDPI AG (2021), Nr. 3, S. 347
    3. 56.
      Märkle, Pascal ; Maier, Lisa-Katharina ; Maaß, Sandra ; Hirschfeld, Claudia ; Bartel, Jürgen ; Becher, Dörte ; Voß, Björn ; Marchfelder, Anita: A small RNA is linking CRISPR-Cas and zinc transport. In: Frontiers in Molecular Biosciences, Frontiers in Molecular Biosciences. Bd. 8, Frontiers (2021)
  2. 2020

    1. 55.
      Schäfer, Richard A ; Lott, Steffen C ; Georg, Jens ; Grüning, Björn A ; Hess, Wolfgang R ; Voß, Björn: GLASSGo in Galaxy: High-Throughput, Reproducible and Easy-to-Integrate Prediction of sRNA Homologs. In: Press, O. U. (Hrsg.) Bioinformatics, Bioinformatics. (2020), Nr. btaa556
    2. 54.
      Ankenbauer, Andreas ; Schäfer, Richard A. ; Viegas, Sandra C. ; Pobre, Vânia ; Voß, Björn ; Arraiano, Cecília M. ; Takors, Ralf: Pseudomonas Putida KT2440 Is Naturally Endowed to Withstand Industrial-Scale Stress Conditions. In: Wiley (Hrsg.) Microbial Biotechnology, Microbial Biotechnology. Bd. n/a (2020), Nr. n/a
    3. 53.
      Alkhnbashi, Omer S. ; Meier, Tobias ; Mitrofanov, Alexander ; Backofen, Rolf ; Voß, Björn: CRISPR-Cas Bioinformatics. In: Methods, Methods. Bd. 172 (2020), S. 3–11
  3. 2018

    1. 52.
      Schönberger, Brigitte ; Schaal, Christoph ; Schäfer, Richard ; Voß, Björn: RNA interactomics: recent advances and remaining challenges. In: F1000Research, F1000Research. Bd. 7, F1000 Research, Ltd. (2018), S. 1824
    2. 51.
      Lott, Steffen Christian ; Schäfer, Richard A. ; Mann, Martin ; Backofen, Rolf ; Hess, Wolfgang R. ; Voß, Björn ; Georg, Jens: GLASSgo - Automated and reliable detection of sRNA homologs from a single input sequence. In: Frontiers in Genetics, Frontiers in Genetics. Bd. 9, Frontiers (2018)
  4. 2017

    1. 50.
      Pfreundt, Ulrike ; Spungin, Dina ; Hou, Shengwei ; Voß, Björn ; Berman-Frank, Ilana ; Hess, Wolfgang R.: Genome of a giant bacteriophage from a decaying Trichodesmium bloom. In: Marine Genomics, Marine Genomics. Bd. 33 (2017), S. 21–25
  5. 2016

    1. 49.
      Stazic, D. ; Voß, B.: The complexity of bacterial transcriptomes. In: Journal of Biotechnology, Journal of Biotechnology. Bd. 232 (2016), S. 69--78. — 00000
    2. 48.
      Álvarez, Daniel ; Voß, Björn ; Maass, Dirk ; Wüst, Florian ; Schaub, Patrick ; Beyer, Peter ; Welsch, Ralf: 5’UTR-Mediated Translational Control of Splice Variants of Phytoene Synthase. In: Plant Physiol., Plant Physiol. (2016), S. pp.01262.2016
    3. 47.
      Schäfer, Richard A. ; Voß, Björn: VisualGraphX: interactive graph visualization within Galaxy. In: Bioinformatics, Bioinformatics. (2016), S. btw414. — 00000 PMID: 27412091
  6. 2015

    1. 46.
      Kopf, Matthias ; Klähn, Stephan ; Scholz, Ingeborg ; Hess, Wolfgang R. ; Voß, Björn: Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria. In: Scientific Reports, Scientific Reports. Bd. 5 (2015), Nr. 9560. — 00000
    2. 45.
      Lott, Steffen C. ; Voß, Björn ; Hess, Wolfgang R. ; Steglich, Claudia: CoVennTree: a new method for the comparative analysis of large datasets. In: Bioinformatics and Computational Biology, Bioinformatics and Computational Biology. Bd. 6 (2015), S. 43. — 00000
  7. 2014

    1. 44.
      Kopf, Matthias ; Klähn, Stephan ; Pade, Nadin ; Weingärtner, Christian ; Hagemann, Martin ; Voß, Björn ; Hess, Wolfgang R.: Comparative Genome Analysis of the Closely Related Synechocystis Strains PCC 6714 and PCC 6803. In: DNA Research, DNA Research. Bd. 21 (2014), Nr. 3, S. 255--266. — 00005
    2. 43.
      Kopf, Matthias ; Klähn, Stephan ; Voß, Björn ; Stüber, Kurt ; Huettel, Bruno ; Reinhardt, Richard ; Hess, Wolfgang R.: Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714. In: Genome Announcements, Genome Announcements. Bd. 2 (2014), Nr. 4, S. e00757--14. — 00005
    3. 42.
      Voß, Björn ; Hess, Wolfgang R.: The identification of bacterial non-coding RNAs through complementary approaches. In: Handbook of RNA Biochemistry, Handbook of RNA Biochemistry. Bd. 2. 2. Aufl. : WILEY-VCH, Weinheim, Germany, 2014. — 00000, S. 787--800
    4. 41.
      Bischler, Thorsten ; Kopf, Matthias ; Voß, Björn: Transcript mapping based on dRNA-seq data. In: BMC Bioinformatics, BMC Bioinformatics. Bd. 15 (2014), Nr. 1, S. 122. — 00002
    5. 40.
      Kopf, Matthias ; Klähn, Stephan ; Scholz, Ingeborg ; Matthiessen, Jasper K. F. ; Hess, Wolfgang R. ; Voß, Björn: Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803. In: DNA Research, DNA Research. Bd. 21 (2014), Nr. 5, S. 527--539. — 00005
    6. 39.
      Huang, Jiabin ; Voß, Björn: Analysing RNA-kinetics based on folding space abstraction. In: BMC Bioinformatics, BMC Bioinformatics. Bd. 15 (2014), Nr. 1, S. 60. — 00001
    7. 38.
      Voigt, Karsten ; Sharma, Cynthia M. ; Mitschke, Jan ; Joke Lambrecht, S. ; Voß, Björn ; Hess, Wolfgang R. ; Steglich, Claudia: Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity. In: The ISME Journal, The ISME Journal. (2014). — 00007
    8. 37.
      Rogato, Alessandra ; Richard, Hugues ; Sarazin, Alexis ; Voß, Björn ; Navarro, Soizic Cheminant ; Champeimont, Raphaël ; Navarro, Lionel ; Carbone, Alessandra ; u. a.: The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. In: BMC Genomics, BMC Genomics. Bd. 15 (2014), Nr. 1, S. 698. — 00000
    9. 36.
      Giegerich, Robert ; Voß, Björn: RNA Secondary Structure Analysis Using Abstract Shapes. In: Handbook of RNA Biochemistry, Handbook of RNA Biochemistry. Bd. 2. 2. Aufl. : WILEY-VCH, Weinheim, Germany, 2014. — 00000, S. 579--594
  8. 2013

    1. 35.
      Hein, Stephanie ; Scholz, Ingeborg ; Voß, Björn ; Hess, Wolfgang R.: Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. In: RNA Biology, RNA Biology. Bd. 10 (2013), Nr. 5, S. 93--92. — 00027
    2. 34.
      Voß, Björn ; Bolhuis, Henk ; Fewer, David P. ; Kopf, Matthias ; Möke, Fred ; Haas, Fabian ; El-Shehawy, Rehab ; Hayes, Paul ; u. a.: Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis. In: PLoS ONE, PLoS ONE. Bd. 8 (2013), Nr. 3, S. e60224. — 00013
  9. 2012

    1. 33.
      Gierga, Gregor ; Voß, Björn ; Hess, Wolfgang R.: Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions. In: The ISME Journal, The ISME Journal. Bd. 6 (2012), Nr. 8, S. 1544--1557. — 00008
    2. 32.
      Trautmann, Danika ; Voß, Björn ; Wilde, Annegret ; Al-Babili, Salim ; Hess, Wolfgang R.: Microevolution in Cyanobacteria: Re-sequencing a Motile Substrain of Synechocystis sp. PCC 6803. In: DNA Research, DNA Research. (2012). — 00025
    3. 31.
      Madhugiri, Ramakanth ; Pessi, Gabriella ; Voß, Björn ; Hahn, Julia ; Sharma, Cynthia M. ; Reinhardt, Richard ; Vogel, Jörg ; Hess, Wolfgang R. ; u. a.: Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis. In: RNA Biology, RNA Biology. Bd. 9 (2012), Nr. 1, S. 45--56. — 00011
    4. 30.
      Huang, Jiabin ; Backofen, Rolf ; Voß, Björn: Abstract folding space analysis based on helices. In: RNA, RNA. Bd. 18 (2012), Nr. 12, S. 2135--2147. — 00005
    5. 29.
      Pfreundt, Ulrike ; Stal, Lucas J ; Voß, Bjorn ; Hess, Wolfgang R: Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium. In: ISME J, ISME J. (2012). — 00011
  10. 2011

    1. 28.
      Mitschke, Jan ; Georg, Jens ; Scholz, Ingeborg ; Sharma, Cynthia M. ; Dienst, Dennis ; Bantscheff, Jens ; Voß, Björn ; Steglich, Claudia ; u. a.: An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences. Bd. 108 (2011), Nr. 5, S. 2124--2129. — 00150
    2. 27.
      Babski, Julia ; Tjaden, Brian ; Voß, Björn ; Jellen-Ritter, Angelika ; Marchfelder, Anita ; Hess, Wolfgang R. ; Soppa, Jörg: Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii. In: RNA Biology, RNA Biology. Bd. 8 (2011), Nr. 5, S. 806--816. — 00010
    3. 26.
      Huang, Jiabin ; Voß, Björn: RNAHeliCes – Folding space analysis based on position aware structure abstraction. In: Proceedings of the German Conference on Bioinformatics 2011 (GCB 2011), Proceedings of the German Conference on Bioinformatics 2011 (GCB 2011), 2011. — 00000, S. RT--31
  11. 2010

    1. 25.
      Bogomolov, Sergiy ; Mann, Martin ; Voß, Björn ; Podelski, Andreas ; Backofen, Rolf: Shape-based barrier estimation for RNAs. In: In Proceedings of German Conference on Bioinformatics GCB’10, In Proceedings of German Conference on Bioinformatics GCB’10. Bd. 173 : GI, 2010. — 00004, S. 42--51
    2. 24.
      Ionescu, Danny ; Voß, Björn ; Oren, Aharon ; Hess, Wolfgang R. ; Muro-Pastor, Alicia M.: Heterocyst-Specific Transcription of NsiR1, a Non-Coding RNA Encoded in a Tandem Array of Direct Repeats in Cyanobacteria. In: Journal of Molecular Biology, Journal of Molecular Biology. Bd. 398 (2010), Nr. 2, S. 177--188. — 00016
    3. 23.
      Voß, Bjoern ; Meinecke, Linda ; Kurz, Thorsten ; Al-Babili, Salim ; Beck, Christoph F. ; Hess, Wolfgang R.: Hemin and Mg-Protoporphyrin IX Induce Global Changes in Gene Expression in Chlamydomonas reinhardtii. In: Plant Physiol., Plant Physiol. (2010), S. pp.110.158683. — 00025
    4. 22.
      Mohr, Remus ; Voß, Bjorn ; Schliep, Martin ; Kurz, Thorsten ; Maldener, Iris ; Adams, David G ; Larkum, Anthony D W ; Chen, Min ; u. a.: A new chlorophyll d-containing cyanobacterium: evidence for niche adaptation in the genus Acaryochloris. In: ISME J, ISME J. Bd. 4 (2010), Nr. 11, S. 1456--1469. — 00022
    5. 21.
      Georg, J. ; Honsel, A. ; Voß, B. ; Rennenberg, H. ; Hess, W. R.: A long antisense RNA in plant chloroplasts. In: New Phytologist, New Phytologist. Bd. 186 (2010), Nr. 3, S. 615--622. — 00023
  12. 2009

    1. 20.
      Voß, Björn ; Hölscher, Marion ; Baumgarth, Birgit ; Kalbfleisch, Andreas ; Kaya, Ceren ; Hess, Wolfgang R. ; Becker, Anke ; Elena Evguenieva-Hackenberg: Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. In: Biochemical and Biophysical Research Communications, Biochemical and Biophysical Research Communications. Bd. 390 (2009), Nr. 2, S. 331--336. — 00000
    2. 19.
      Gierga, Gregor ; Voß, Björn ; Hess, Wolfgang R.: The Yfr2 ncRNA family, a group of abundant RNA molecules widely conserved in cyanobacteria. In: RNA Biology, RNA Biology. Bd. 6 (2009), Nr. 3, S. 222--227. — 00011
    3. 18.
      Voß, Bjoern ; Georg, Jens ; Schon, Verena ; Ude, Susanne ; Hess, Wolfgang: Biocomputational prediction of non-coding RNAs in model cyanobacteria. In: BMC Genomics, BMC Genomics. Bd. 10 (2009), Nr. 1, S. 123. — 00054
    4. 17.
      Georg, Jens ; Voß, Bjorn ; Scholz, Ingeborg ; Mitschke, Jan ; Wilde, Annegret ; Hess, Wolfgang R: Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. In: Mol Syst Biol, Mol Syst Biol. Bd. 5 (2009). — 00112
    5. 16.
      Soppa, Jörg ; Straub, Julia ; Brenneis, Mariam ; Jellen-Ritter, Angelika ; Heyer, Ruth ; Fischer, Susan ; Granzow, Michaela ; Voß, Björn ; u. a.: Small RNAs of the halophilic archaeon Haloferax volcanii. In: Biochemical Society Transactions, Biochemical Society Transactions. Bd. 37 (2009), Nr. Pt 1, S. 133--136. — 00017
  13. 2008

    1. 15.
      Steglich, Claudia ; Futschik, Matthias E. ; Lindell, Debbie ; Voß, Bjoern ; Chisholm, Sallie W. ; Hess, Wolfgang R.: The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus. In: PLoS Genet, PLoS Genet. Bd. 4 (2008), Nr. 8, S. e1000173. — 00069
  14. 2007

    1. 14.
      Fattash, Isam ; Voß, Bjoern ; Reski, Ralf ; Hess, Wolfgang ; Frank, Wolfgang: Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. In: BMC Plant Biology, BMC Plant Biology. Bd. 7 (2007), Nr. 1, S. 13. — 00085
    2. 13.
      Axmann, Ilka M. ; Holtzendorff, Julia ; Voß, Bjoern ; Kensche, Philip ; Hess, Wolfgang R.: Two distinct types of 6S RNA in Prochlorococcus. In: Gene, Gene. Bd. 406 (2007), Nr. 1–2, S. 69--78. — 00025
    3. 12.
      Chen, Xiao Hua ; Koumoutsi, Alexandra ; Scholz, Romy ; Eisenreich, Andreas ; Schneider, Kathrin ; Heinemeyer, Isabelle ; Morgenstern, Burkhard ; Voß, Bjoern ; u. a.: Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. In: Nat Biotech, Nat Biotech. Bd. 25 (2007), Nr. 9, S. 1007--1014. — 00244
    4. 11.
      Voß, Björn ; Gierga, Gregor ; Axmann, Ilka ; Hess, Wolfgang: A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. In: BMC Genomics, BMC Genomics. Bd. 8 (2007), Nr. 1, S. 375. — 00025
  15. 2006

    1. 10.
      Talmor-Neiman, Mali ; Stav, Ran ; Frank, Wolfgang ; Voß, Bjoern ; Arazi, Tzahi: Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss. In: The Plant Journal, The Plant Journal. Bd. 47 (2006), Nr. 1, S. 25--37. — 00075
    2. 9.
      Voß, Bjoern ; Giegerich, Robert ; Rehmsmeier, Marc: Complete probabilistic analysis of RNA shapes. In: BMC Biology, BMC Biology. Bd. 4 (2006), Nr. 1, S. 5. — 00071
    3. 8.
      Reeder, Jens ; Höchsmann, Matthias ; Rehmsmeier, Marc ; Voß, Bjoern ; Giegerich, Robert: Beyond Mfold: Recent advances in RNA bioinformatics. In: Journal of Biotechnology, Journal of Biotechnology. Bd. 124 (2006), Nr. 1, S. 41--55. — 00057
    4. 7.
      Steffen, Peter ; Voß, Bjoern ; Rehmsmeier, Marc ; Reeder, Jens ; Giegerich, Robert: RNAshapes: an integrated RNA analysis package based on abstract shapes. In: Bioinformatics, Bioinformatics. Bd. 22 (2006), Nr. 4, S. 500--503. — 00193
    5. 6.
      Backofen, R. ; Borrmann, H.-G. ; Deck, W. ; Dedner, A. ; Raedt, L. De ; Desch, K. ; Diesmann, M. ; Geier, M. ; u. a.: A Bottom-up approach to Grid-Computing at a University: the Black-Forest-Grid Initiative. In: Praxis der Informationsverarbeitung und Kommunikation, Praxis der Informationsverarbeitung und Kommunikation. Bd. 29 (2006), Nr. 2, S. 81--87. — 00004
    6. 5.
      Voß, Bjoern: Structural analysis of aligned RNAs. In: Nucl. Acids Res., Nucl. Acids Res. Bd. 34 (2006), Nr. 19, S. 5471--5481. — 00020 bibtex: Voss:2006a
  16. 2005

    1. 4.
      Voß, Bjoern: Advanced tools for RNA secondary structure analysis, Universitätsbibliothek Bielefeld, 2005. — 00000
  17. 2004

    1. 3.
      Höchsmann, Matthias ; Voß, Bjoern ; Giegerich, Robert: Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach. In: IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE/ACM Transactions on Computational Biology and Bioinformatics. Bd. 1 (2004), Nr. 1, S. 53--62. — 00117
    2. 2.
      Giegerich, Robert ; Voß, Bjoern ; Rehmsmeier, Marc: Abstract shapes of RNA. In: Nucl. Acids Res., Nucl. Acids Res. Bd. 32 (2004), Nr. 16, S. 4843--4851. — 00166
    3. 1.
      Voß, Björn ; Meyer, Carsten ; Giegerich, Robert: Evaluating the predictability of conformational switching in RNA. In: Bioinformatics, Bioinformatics. Bd. 20 (2004), Nr. 10, S. 1573--1582. — 00000
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